RPANDA : an R package for macroevolutionary analyses on phylogenetic trees

نویسندگان
چکیده

برای دانلود باید عضویت طلایی داشته باشید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

iteRates: An R Package for Implementing a Parametric Rate Comparison on Phylogenetic Trees

Patterns of diversification rate variation detected in phylogenetic hypotheses are frequently used to infer historical, ecological, and evolutionary processes. The parametric rate comparison (PRC) is a method for detecting rate variation in trees that models branch lengths as random variables drawn from familiar statistical distributions. iteRates is a library of functions for the R statistical...

متن کامل

BITE: an R package for biodiversity analyses

Nowadays, molecular data analyses for biodiversity studies often require advanced bioinformatics skills, preventing many life scientists from analyzing their own data autonomously. BITE R package provides complete and user-friendly functions to handle SNP data and third-party software results (i.e. Admixture, TreeMix), facilitating their visualization, interpretation and use. Furthermore, BITE ...

متن کامل

RapidPolygonLookup: An R package for polygon lookup using kd trees

Coordinate level spatial data need to be frequently aggregated to higher geographical identities like census blocks, ZIP codes or police district boundaries for analysis. This process requires mapping each point in the given data set to an individual element of the desired geographical hierarchy. Unless efficient data structures are used, this can be a daunting task. The operation point.in.poly...

متن کامل

Taxon sampling affects inferences of macroevolutionary processes from phylogenetic trees.

Bertrand, Y., and M. Härlin. 2006. Stability and universality in the application of taxon names in phylogenetic nomenclature. Syst. Biol. 55:848–858. Bininda-Emonds, O. R. P. 2004. The evolution of supertrees. Trends Ecol. Evol. 19:315–322. Bryant, H. N., and P. D. Cantino. 2002. A review of criticisms of phylogenetic nomenclature: Is taxonomic freedom the fundamental issue? Biol. Rev. 77:39–55...

متن کامل

Geiger V2.0: an Expanded Suite of Methods for Fitting Macroevolutionary Models to Phylogenetic Trees

SUMMARY Phylogenetic comparative methods are essential for addressing evolutionary hypotheses with interspecific data. The scale and scope of such data have increased dramatically in the past few years. Many existing approaches are either computationally infeasible or inappropriate for data of this size. To address both of these problems, we present geiger v2.0, a complete overhaul of the popul...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

ژورنال

عنوان ژورنال: Methods in Ecology and Evolution

سال: 2016

ISSN: 2041-210X,2041-210X

DOI: 10.1111/2041-210x.12526